fatal error: H5Cpp.h: No such file or directory #include “H5Cpp.h“

rosetta中配置hdf5环境报错，H5CPP没有找见

在rosetta中的main/source目录下执行命令sudo ./scons.py -j16 bin mode=release extras=hdf5报错
scons: *** [build/src/release/linux/5.10/64/x86/gcc/6.3/hdf5/protocols/indexed_ structure_store/H5FragmentStoreBackend.os] Error 1
scons: *** [build/src/release/linux/5.10/64/x86/gcc/6.3/hdf5/protocols/indexed_ structure_store/H5StructureStoreBackend.os] Error 1
In file included from src/protocols/indexed_structure_store/StructureStoreManag er.cc:30:0:
src/protocols/indexed_structure_store/H5StructureStoreBackend.hh:32:19: fatal e rror: H5Cpp.h: No such file or directory
#include “H5Cpp.h”
^
compilation terminated.

解决办法

• 进入Rosetta/main/source/tools/build/目录

• 找见site.settings文件
  

• 在相应位置添加代码"include_path" : (os.environ["INCLUDE"].split(":") if "INCLUDE" in os.environ else []) + ["/usr/include/hdf5/serial/"],
  
  注意：前提是已经安装好hdf5，链接，才有相应的hdf5目录/usr/include/hdf5/serial/

  

之后重新运行命令即可正常进行配置

sudo ./scons.py -j16 bin mode=release extras=hdf5